Package: FinePop 1.5.2

FinePop: Fine-Scale Population Analysis

Statistical tool set for population genetics. The package provides following functions: 1) empirical Bayes estimator of Fst and other measures of genetic differentiation, 2) regression analysis of environmental effects on genetic differentiation using bootstrap method, 3) interfaces to read and manipulate 'GENEPOP' format data files and allele/haplotype frequency format files.

Authors:Reiichiro Nakamichi, Hirohisa Kishino, Shuichi Kitada

FinePop_1.5.2.tar.gz
FinePop_1.5.2.zip(r-4.5)FinePop_1.5.2.zip(r-4.4)FinePop_1.5.2.zip(r-4.3)
FinePop_1.5.2.tgz(r-4.5-any)FinePop_1.5.2.tgz(r-4.4-any)FinePop_1.5.2.tgz(r-4.3-any)
FinePop_1.5.2.tar.gz(r-4.5-noble)FinePop_1.5.2.tar.gz(r-4.4-noble)
FinePop_1.5.2.tgz(r-4.4-emscripten)FinePop_1.5.2.tgz(r-4.3-emscripten)
FinePop.pdf |FinePop.html
FinePop/json (API)

# Install 'FinePop' in R:
install.packages('FinePop', repos = c('https://nakamichireiichiro.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • herring - An example dataset of Atlantic herring.
  • jsmackerel - An example dataset of Japanese Spanich mackerel in GENEPOP and frequency format.

On CRAN:

Conda-Forge:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.48 score 15 scripts 290 downloads 2 mentions 13 exports 0 dependencies

Last updated 12 months agofrom:3a1c952ecc. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 12 2025
R-4.5-winOKFeb 12 2025
R-4.5-macOKFeb 12 2025
R-4.5-linuxOKFeb 12 2025
R-4.4-winOKFeb 12 2025
R-4.4-macOKFeb 12 2025
R-4.3-winOKFeb 12 2025
R-4.3-macOKFeb 12 2025

Exports:clip.genepopDJEBDJEBFSTEBGstHFstBootFstEnvGstHGstNGstNCread.frequencyread.genepopthetaWC.pair

Dependencies: