Package: FinePop 1.5.2

FinePop: Fine-Scale Population Analysis

Statistical tool set for population genetics. The package provides following functions: 1) empirical Bayes estimator of Fst and other measures of genetic differentiation, 2) regression analysis of environmental effects on genetic differentiation using bootstrap method, 3) interfaces to read and manipulate 'GENEPOP' format data files and allele/haplotype frequency format files.

Authors:Reiichiro Nakamichi, Hirohisa Kishino, Shuichi Kitada

FinePop_1.5.2.tar.gz
FinePop_1.5.2.zip(r-4.5)FinePop_1.5.2.zip(r-4.4)FinePop_1.5.2.zip(r-4.3)
FinePop_1.5.2.tgz(r-4.4-any)FinePop_1.5.2.tgz(r-4.3-any)
FinePop_1.5.2.tar.gz(r-4.5-noble)FinePop_1.5.2.tar.gz(r-4.4-noble)
FinePop_1.5.2.tgz(r-4.4-emscripten)FinePop_1.5.2.tgz(r-4.3-emscripten)
FinePop.pdf |FinePop.html
FinePop/json (API)

# Install 'FinePop' in R:
install.packages('FinePop', repos = c('https://nakamichireiichiro.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • herring - An example dataset of Atlantic herring.
  • jsmackerel - An example dataset of Japanese Spanich mackerel in GENEPOP and frequency format.

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.48 score 15 scripts 256 downloads 2 mentions 13 exports 0 dependencies

Last updated 8 months agofrom:3a1c952ecc. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxOKOct 31 2024
R-4.4-winOKOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:clip.genepopDJEBDJEBFSTEBGstHFstBootFstEnvGstHGstNGstNCread.frequencyread.genepopthetaWC.pair

Dependencies: