{ "_id": "6a48de1ab5e98c4082a00d2e", "Package": "FinePop2", "Type": "Package", "Title": "Fine-Scale Population Analysis (Rewrite for\nGene-Trait-Environment Interaction Analysis)", "Version": "0.6", "Date": "2026-07-03", "Authors@R": "c(person(given = \"Reiichiro\",\nfamily = \"Nakamichi\",\nrole = c(\"aut\", \"cre\"),\nemail = \"nakamichi_reiichiro33@fra.go.jp\"),\nperson(given = \"Shuichi\",\nfamily = \"Kitada\",\nrole = \"aut\"),\nperson(given = \"Hirohisa\",\nfamily = \"Kishino\",\nrole = \"aut\"))", "Description": "Statistical tool set for population genetics. The package\nprovides following functions: 1) estimators of genetic\ndifferentiation (FST), 2) regression analysis of environmental\neffects on genetic differentiation using generalized least\nsquares (GLS) method, 3) interfaces to read and manipulate\n'GENEPOP' format data files). For more information, see Kitada,\nNakamichi and Kishino (2020) .", "License": "GPL (>= 2.0)", "LazyLoad": "yes", "NeedsCompilation": "no", "Encoding": "UTF-8", "Packaged": { "Date": "2026-07-04 09:41:58 UTC", "User": "root" }, "Author": "Reiichiro Nakamichi [aut, cre], Shuichi Kitada [aut], Hirohisa\nKishino [aut]", "Maintainer": "Reiichiro Nakamichi ", "Repository": "https://nakamichireiichiro.r-universe.dev", "Date/Publication": "2026-07-03 16:40:08 UTC", "RemoteUrl": "https://github.com/cran/FinePop2", "RemoteRef": "HEAD", "RemoteSha": "7c1900bc6926f66dc5bb7944d554a9f8efb83ee1", "_user": "nakamichireiichiro", "_type": "src", "_file": "FinePop2_0.6.tar.gz", "_fileid": "https://r2.ropensci.org/43cca21a4016e13be78437e3460d062e6653625a3c8fa5065ceaaec785298f93", "_filesize": 193511, "_sha256": "43cca21a4016e13be78437e3460d062e6653625a3c8fa5065ceaaec785298f93", "_expires": "2026-10-12T10:19:05.000Z", "_created": "2026-07-04T09:41:58.000Z", "_published": "2026-07-04T10:19:06.754Z", "_jobs": [ { "job": 85122132993, "time": 103, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8080562024" }, { "job": 85122132970, "time": 111, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8080563117" }, { "job": 85122132990, "time": 154, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8080796500" }, { "job": 85122132967, "time": 126, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8080781676" }, { "job": 85121989877, "time": 139, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8080549345" }, { "job": 85122132963, "time": 83, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8080559648" }, { "job": 85122132971, "time": 63, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8080557204" }, { "job": 85122132972, "time": 61, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8080557087" }, { "job": 85122132980, "time": 62, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8080557404" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/nakamichireiichiro/actions/runs/28702210150", "_status": "success", "_upstream": "https://github.com/cran/FinePop2", "_commit": { "id": "7c1900bc6926f66dc5bb7944d554a9f8efb83ee1", "author": "Reiichiro Nakamichi ", "committer": "cran-robot ", "message": "version 0.6\n", "time": 1783096808 }, "_maintainer": { "name": "Reiichiro Nakamichi", "email": "nakamichi_reiichiro33@fra.go.jp", "login": "nakamichireiichiro", "description": "", "uuid": 128285129 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4.0", "role": "Depends" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-27", "n": 1 } ], "_tags": [ { "name": "0.6", "date": "2026-07-03" } ], "_stars": 0, "_contributors": [ { "user": "nakamichireiichiro", "count": 1, "uuid": 128285129 } ], "_userbio": { "uuid": 128285129, "type": "user", "name": "NAKAMICHI Reiichiro", "followers": 0 }, "_downloads": { "count": 52, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/FinePop2" }, "_searchresults": 1, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/FinePop2.html", "manual.pdf" ], "_realowner": "nakamichireiichiro", "_cranurl": false, "_releases": [ { "version": "0.4", "date": "2020-02-28" }, { "version": "0.6", "date": "2026-07-03" } ], "_exports": [ "clip.GENEPOP", "globalFST", "GLS", "locus_specificFST", "pop_pairwiseFST", "pop_specificFST", "read.GENEPOP" ], "_datasets": [ { "name": "herring", "title": "An example dataset of Atlantic herring.", "object": "herring", "file": "herring.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "jsmackerel", "title": "An example dataset of Japanese Spanich mackerel in GENEPOP and frequency format.", "object": "jsmackerel", "file": "jsmackerel.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "FinePop2-package", "title": "Fine-Scale Population Analysis (Rewrite for Gene-Trait-Environment Interaction Analysis)", "topics": [ "FinePop2-package" ] }, { "page": "clip.GENEPOP", "title": "Remove designated markers from a GENEPOP file.", "topics": [ "clip.GENEPOP" ] }, { "page": "globalFST", "title": "Genome-wide global FST (Weir & Cockerham 1984).", "topics": [ "globalFST" ] }, { "page": "GLS", "title": "Generalized least squres for regression analysis considering auto correlation.", "topics": [ "GLS" ] }, { "page": "herring", "title": "An example dataset of Atlantic herring.", "topics": [ "herring" ] }, { "page": "jsmackerel", "title": "An example dataset of Japanese Spanich mackerel in GENEPOP and frequency format.", "topics": [ "jsmackerel" ] }, { "page": "locus_specificFST", "title": "Locus-specific global FST (Kitada et al. 2007, 2017).", "topics": [ "locus_specificFST" ] }, { "page": "pop_pairwiseFST", "title": "Genome-wide poppulation-paiwise FST (Nei & Chesser 1983).", "topics": [ "pop_pairwiseFST" ] }, { "page": "pop_specificFST", "title": "Genome-wide population-specific FST (Weir & Goudet 2017).", "topics": [ "pop_specificFST" ] }, { "page": "read.GENEPOP", "title": "Create a genotype data object of populations from a GENEPOP format file.", "topics": [ "read.GENEPOP" ] } ], "_rundeps": [], "_score": 1, "_indexed": true, "_nocasepkg": "finepop2", "_universes": [ "nakamichireiichiro" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.6", "date": "2026-07-04T09:43:40.000Z", "distro": "resolute", "commit": "7c1900bc6926f66dc5bb7944d554a9f8efb83ee1", "fileid": "https://r2.ropensci.org/9d64759cea9c8460c5bd53ef612d3d9de0d72d2b05aca1c8faad20275bf3f05c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nakamichireiichiro/actions/runs/28702210150" }, { "r": "4.6.1", "os": "linux", "version": "0.6", "date": "2026-07-04T09:43:48.000Z", "distro": "resolute", "commit": "7c1900bc6926f66dc5bb7944d554a9f8efb83ee1", "fileid": "https://r2.ropensci.org/1ccf8b680c87227d418e2a5a8d014f5248817161db5461ff651cc94b469d20c9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nakamichireiichiro/actions/runs/28702210150" }, { "r": "4.5.3", "os": "mac", "version": "0.6", "date": "2026-07-04T10:17:59.000Z", "commit": "7c1900bc6926f66dc5bb7944d554a9f8efb83ee1", "fileid": "https://r2.ropensci.org/e451079148866443f4229ea390b64f6b9091ba93b0c55c9e9c99dd3a0d7e25eb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nakamichireiichiro/actions/runs/28702210150" }, { "r": "4.6.1", "os": "mac", "version": "0.6", "date": "2026-07-04T10:15:55.000Z", "commit": "7c1900bc6926f66dc5bb7944d554a9f8efb83ee1", "fileid": "https://r2.ropensci.org/493d16681474218b8290841d3dabb21c9d0ef541db674f61eb5d98ce12af59de", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nakamichireiichiro/actions/runs/28702210150" }, { "r": "4.6.0", "os": "wasm", "version": "0.6", "date": "2026-07-04T09:43:34.000Z", "commit": "7c1900bc6926f66dc5bb7944d554a9f8efb83ee1", "fileid": "https://r2.ropensci.org/3be36d5a9e84cd39db18b5688ba24d1173406068ab52de6f6a914c62a0b9ea43", "status": "success", "buildurl": "https://github.com/r-universe/nakamichireiichiro/actions/runs/28702210150" }, { "r": "4.7.0", "os": "win", "version": "0.6", "date": "2026-07-04T09:42:55.000Z", "commit": "7c1900bc6926f66dc5bb7944d554a9f8efb83ee1", "fileid": "https://r2.ropensci.org/055b5623ab273cb4abd6ae1dfb36db389e25ad0d75e50f0c5bbb695752ed9b05", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nakamichireiichiro/actions/runs/28702210150" }, { "r": "4.5.3", "os": "win", "version": "0.6", "date": "2026-07-04T09:42:51.000Z", "commit": "7c1900bc6926f66dc5bb7944d554a9f8efb83ee1", "fileid": "https://r2.ropensci.org/3bff37aa514ab7c7f65820bf53b02d43c12f18fa9a0dbc1a4861455786255e6b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nakamichireiichiro/actions/runs/28702210150" }, { "r": "4.6.1", "os": "win", "version": "0.6", "date": "2026-07-04T09:42:57.000Z", "commit": "7c1900bc6926f66dc5bb7944d554a9f8efb83ee1", "fileid": "https://r2.ropensci.org/f24898acc04f078e89d6e43bc80d09d07d8117d99ac088a53c43a8d3bca68d5c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nakamichireiichiro/actions/runs/28702210150" } ] }