Package: FinePop2 0.6

FinePop2: Fine-Scale Population Analysis (Rewrite for Gene-Trait-Environment Interaction Analysis)

Statistical tool set for population genetics. The package provides following functions: 1) estimators of genetic differentiation (FST), 2) regression analysis of environmental effects on genetic differentiation using generalized least squares (GLS) method, 3) interfaces to read and manipulate 'GENEPOP' format data files). For more information, see Kitada, Nakamichi and Kishino (2020) <doi:10.1101/2020.01.30.927186>.

Authors:Reiichiro Nakamichi [aut, cre], Shuichi Kitada [aut], Hirohisa Kishino [aut]

FinePop2_0.6.tar.gz
FinePop2_0.6.zip(r-4.7-any)FinePop2_0.6.zip(r-4.6-any)FinePop2_0.6.zip(r-4.5-any)
FinePop2_0.6.tgz(r-4.6-any)FinePop2_0.6.tgz(r-4.5-any)
FinePop2_0.6.tar.gz(r-4.7-any)FinePop2_0.6.tar.gz(r-4.6-any)
FinePop2_0.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
FinePop2/json (API)

# Install 'FinePop2' in R:
install.packages('FinePop2', repos = c('https://nakamichireiichiro.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • herring - An example dataset of Atlantic herring.
  • jsmackerel - An example dataset of Japanese Spanich mackerel in GENEPOP and frequency format.

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 1 scripts 362 downloads 7 exports 0 dependencies

Last updated from:7c1900bc69. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK97
source / vignettesOK135
linux-releaseOK85
macos-releaseOK102
macos-oldrelOK99
windows-develOK60
windows-releaseOK62
windows-oldrelOK48
wasm-releaseOK95

Exports:clip.GENEPOPglobalFSTGLSlocus_specificFSTpop_pairwiseFSTpop_specificFSTread.GENEPOP

Dependencies: